{"created":"2023-07-27T06:52:20.411363+00:00","id":46197,"links":{},"metadata":{"_buckets":{"deposit":"c77e3878-7409-4031-aa6e-c249cd6d1053"},"_deposit":{"created_by":18,"id":"46197","owners":[18],"pid":{"revision_id":0,"type":"depid","value":"46197"},"status":"published"},"_oai":{"id":"oai:kanazawa-u.repo.nii.ac.jp:00046197","sets":["2812:2813:2818"]},"author_link":["80081","80080"],"item_9_biblio_info_8":{"attribute_name":"書誌情報","attribute_value_mlt":[{"bibliographicIssueDates":{"bibliographicIssueDate":"2016-06-17","bibliographicIssueDateType":"Issued"},"bibliographicPageStart":"4p.","bibliographicVolumeNumber":"2012-04-01 - 2016-03-31","bibliographic_titles":[{"bibliographic_title":"平成27(2015)年度 科学研究費補助金 基盤研究(B) 研究成果報告書"},{"bibliographic_title":"2015 Fiscal Year Final Research Report","bibliographic_titleLang":"en"}]}]},"item_9_creator_33":{"attribute_name":"著者別表示","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{}],"nameIdentifiers":[{},{}]}]},"item_9_description_21":{"attribute_name":"抄録","attribute_value_mlt":[{"subitem_description":"シャジクモ(Chara braunii)の概要ゲノム配列を解読した。シャジクモはストレプトファイツ類の中で陸上植物についで複雑な体制をもつ藻類であるシャジクモ類の中では小型の藻類で、実験室内で短時間に世代を完了する事が可能である。この概要ゲノム配列は、11,808本のスキャッフォールドからなり、35883遺伝子座上に36887個の遺伝子モデルが予測された。染色体スケールのスーパースキャッフォルドを得るため二つの系統間の交配を行い、子孫が外交配によっている事をSNPにもとづいて設計したPCR-RFLPによって同定した。この子孫株について遺伝学的地図を作成するためのランダムシーケンスを行った。","subitem_description_type":"Abstract"},{"subitem_description":"A draft genome sequence of Chara braunii was determined. Chara braunii is a relatively small monoeicous alga in Charales, which we can culture in lab condition and induce reproductive organs in a short time. The draft genome consisted of 1.75 Gbp in 11,808 scaffolds. Half of the sequence is contained in 234 scafolds at least 2.26 Mb long and 90% is contained in 813 scaffolds at least 551,793 bp long. Gene prediction using RNA-seq data and homology to plant proteomes resulted in 36,887 gene models in 35,883 loci. Further to establish the chromosome scale super scaffold, genetic cross between two accessions were performed. PCR-RFLP primers were designed based on SNP data and progeny derived from out-crossing were determined. Random sequencing of the progeny are performed to construct genetic map based superscaffolds.","subitem_description_type":"Abstract"}]},"item_9_description_22":{"attribute_name":"内容記述","attribute_value_mlt":[{"subitem_description":"研究課題/領域番号:24370095, 研究期間(年度):2012-04-01 - 2016-03-31","subitem_description_type":"Other"},{"subitem_description":"出典：研究課題「シャジクモ概要ゲノムの解読と遺伝学的地図の同時構築による陸上植物進化の解明」課題番号:24370095\n（KAKEN：科学研究費助成事業データベース（国立情報学研究所））\n（https://kaken.nii.ac.jp/report/KAKENHI-PROJECT-24370095/24370095seika/）を加工して作成","subitem_description_type":"Other"}]},"item_9_description_5":{"attribute_name":"提供者所属","attribute_value_mlt":[{"subitem_description":"金沢大学学際科学実験センター遺伝子研究施設","subitem_description_type":"Other"}]},"item_9_identifier_registration":{"attribute_name":"ID登録","attribute_value_mlt":[{"subitem_identifier_reg_text":"10.24517/00052530","subitem_identifier_reg_type":"JaLC"}]},"item_9_relation_28":{"attribute_name":"関連URI","attribute_value_mlt":[{"subitem_relation_name":[{"subitem_relation_name_text":"https://kaken.nii.ac.jp/search/?qm=50390688"}],"subitem_relation_type_id":{"subitem_relation_type_id_text":"https://kaken.nii.ac.jp/search/?qm=50390688","subitem_relation_type_select":"URI"}},{"subitem_relation_name":[{"subitem_relation_name_text":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24370095/"}],"subitem_relation_type_id":{"subitem_relation_type_id_text":"https://kaken.nii.ac.jp/grant/KAKENHI-PROJECT-24370095/","subitem_relation_type_select":"URI"}},{"subitem_relation_name":[{"subitem_relation_name_text":"https://kaken.nii.ac.jp/report/KAKENHI-PROJECT-24370095/24370095seika/"}],"subitem_relation_type_id":{"subitem_relation_type_id_text":"https://kaken.nii.ac.jp/report/KAKENHI-PROJECT-24370095/24370095seika/","subitem_relation_type_select":"URI"}}]},"item_9_version_type_25":{"attribute_name":"著者版フラグ","attribute_value_mlt":[{"subitem_version_resource":"http://purl.org/coar/version/c_ab4af688f83e57aa","subitem_version_type":"AM"}]},"item_files":{"attribute_name":"ファイル情報","attribute_type":"file","attribute_value_mlt":[{"accessrole":"open_date","date":[{"dateType":"Available","dateValue":"2018-10-22"}],"displaytype":"detail","filename":"AD-PR-NISHIYAMA-T-kaken 2016-4p.pdf","filesize":[{"value":"157.9 kB"}],"format":"application/pdf","licensetype":"license_11","mimetype":"application/pdf","url":{"label":"AD-PR-NISHIYAMA-T-kaken 2016-4p.pdf","url":"https://kanazawa-u.repo.nii.ac.jp/record/46197/files/AD-PR-NISHIYAMA-T-kaken 2016-4p.pdf"},"version_id":"7bd40ad2-5fd1-49c2-855c-3878f7a39cb4"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"jpn"}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourcetype":"research report","resourceuri":"http://purl.org/coar/resource_type/c_18ws"}]},"item_title":"シャジクモ概要ゲノムの解読と遺伝学的地図の同時構築による陸上植物進化の解明","item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"シャジクモ概要ゲノムの解読と遺伝学的地図の同時構築による陸上植物進化の解明"},{"subitem_title":"Elucidation of Land plant evolution by genome sequencing and genetic map construction of Chara braunii","subitem_title_language":"en"}]},"item_type_id":"9","owner":"18","path":["2818"],"pubdate":{"attribute_name":"公開日","attribute_value":"2018-10-22"},"publish_date":"2018-10-22","publish_status":"0","recid":"46197","relation_version_is_last":true,"title":["シャジクモ概要ゲノムの解読と遺伝学的地図の同時構築による陸上植物進化の解明"],"weko_creator_id":"18","weko_shared_id":-1},"updated":"2023-07-27T10:48:28.235314+00:00"}